I. Liste des productions de l’umr 1347 Agroécologie Articles dans des revues internationales ou nationales avec comité de lecture





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I.Liste des productions de l’UMR 1347 Agroécologie

  1. Articles dans des revues internationales ou nationales avec comité de lecture


2015

  1. Alves-Carvalho S., Aubert G., Carrère S., Cruaud C., Brochot A.-L., Jacquin F., Klein A., Martin C., Boucherot K., Kreplak J., da Silva C., Moreau S., Gamas P., Wincker P., Gouzy J., Burstin J. (2015) Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species. Plant J. 84:1-19. GEAPSI

  2. Aouadi N., Aubertot J.-N., Caneill J., Munier-Jolain N.M. (2015). Analyzing the impact of the farming context and environmental factors on cropping systems: a regional case study in Burgundy. Eur. J. Agron. 66:21-29. EcolDur

  3. Avelange-Macherel M.-H., Payet N., Lalanne D., Neveu M., Tolleter D., Burstin J., Macherel D. (2015). Variability within a pea core collection of LEAM and HSP22, two mitochondrial seed proteins involved in stress tolerance. Plant Cell Environ. 38:1299-1311. GEAPSI

  4. Ba A., Hafidi M., Qaddoury A., Duponnois R., Wipf D., Hijri M. International Congress on Mycorrhizae: mycorrhizal symbiosis a key factor for improving plant productivity and ecosystems restoration. Mycorrhiza. 25:673-674. IPM

  5. Badenhausser I., Gross N., Cordeau S., Bruneteau L., Vandier M. (2015). Enhancing grasshopper (Orthoptera: Acrididae) communities in sown margin strips: the role of plant diversity and identity. Arthropod-Plant Interact. 9:333-346. EcolDur

  6. Barnard R.L., Osborne C.A., Firestone M.K. (2015). Changing precipitation pattern alters soil microbial community response to wet-up under a Mediterranean-type climate. Isme J. 9:946-957. EcolDur

  7. Beaune D., Bretagnolle F., Bollache L., Hohmann G., Fruth B. (2015). Can fruiting plants control animal behaviour and seed dispersal distance? Behaviour. 152:359-374. MERS

  8. Bécel C., Munier-Jolain N.M., Nicolardot B. (2015). Assessing nitrate leaching in cropping systems based on integratedweed management using the STICS soil–crop model. Eur. J. Agron. 62:46-54. EcolDur

  9. Bediaf H., Sabre R., Journaux L., Cointault F. (2015). Comparison of leaf surface roughness analysis methods by sensitivity to noise analysis. Biosyst. Eng. 136:77-86. GEAPSI

  10. Bell A., Moreau C., Chinoy C., Spanner R., Dalmais M., Le Signor C., Bendahmane A., Klenell M., Domoney C. (2015). SGRL can regulate chlorophyll metabolism and contributes to normal plant growth and development in Pisum sativum L. Plant Mol. Biol. 89:539-558. GEAPSI

  11. Bellanger S., Touzeau S., Guillemin J.-P., Darmency H. (2015). Variation of inbreeding depression in Centaurea cyanus L., a self-incompatible species. Flora. 212:24-29. EcolDur GEAPSI

  12. Borgy B., Reboud X., Peyrard N., Sabbadin R., Gaba S. (2015). Dynamics of weeds in the soil seed bank: a hidden markov model to estimate life history traits from standing plant time series. PLoS One. 10: e0139278 (15p.). EcolDur

  13. Bourgeois E., Dequiedt S., Lelièvre M., Van Oort F., Lamy I., Ranjard L., Maron P.-A. (2015). Miscanthus bioenergy crop stimulates nutrient-cycler bacteria and fungi in wastewater-contaminated agricultural soil. Environ. Chem. Lett. 13:503-511. EcolDur (GenoSol)

  14. Bourgeois E., Dequiedt S., Lelièvre M., Van Oort F., Lamy I., Maron P.-A., Ranjard L. (2015). Positive effect of the Miscanthus bioenergy crop on microbial diversity in wastewater-contaminated soil. Environ. Chem. Lett. 13:495-501. EcolDur (GenoSol)

  15. Bretagnolle V., Gaba S. Weeds for bees? A review. (2015). Agron. Sustain. Dev. 35:891-909. EcolDur

  16. Bürger J., Darmency H., Granger S., Guyot S.H.M., Messéan A., Colbach N. (2015). Simulation study of the impact of changed cropping practices in conventional and GM maize on weeds and associated biodiversity. Agric. Syst. 137:51-63. EcolDur GEAPSI

  17. Burstin J., Salloignon P., Chabert-Martinello M., Magnin-Robert J.-B., Siol M., Jacquin F., Chauveau A., Pont C., Aubert G., Delaitre C., Truntzer C., Duc G. (2015). Genetic diversity and trait genomic prediction in a pea diversity panel. BMC genomics. 16:art 105 (17p.). GEAPSI

  18. Cacoub P., Dabis F., Costagliola D., Almeida K., Lert F., Piroth L., Semaille C. (2015). Burden of HIV and hepatitis C co-infection: the changing epidemiology of hepatitis C in HIV-infected patients in France. Liver Int. 35:65-70. MERS

  19. Chalal M., Wincker J.B., Gourrat K., Trouvelot S., Adrian M., Schnitzler J.-P., Jamois F., Daire X. (2015). Sesquiterpene VOCs are markers of elicitation by sulfated laminarine in grapevine. Front. Plant Sci. 6:art 350 (9p.). IPM

  20. Chirouze C., Journot V., Le Moing V., Raffi F., Piroth L., Reigadas S., Cassuto J.-P., Chene G., Leport C., Hoen B., Anrs Co Aproco-Copilote Study Gr (2015). Viremia copy-years as a predictive marker of all-cause mortality in HIV-1-infected patients initiating a protease inhibitor-containing antiretroviral treatment. Jaids. 68:204-208. MERS

  21. Cimmino A., Fernandez-Aparicio M., Avolio F., Yoneyama K., Rubiales D., Evidente A. (2015). Ryecyanatines A and B and ryecarbonitrilines A and B, substituted cyanatophenol, cyanatobenzo 1,3 dioxole, and benzo 1,3 dioxolecarbonitriles from rye (Secale cereale L.) root exudates: Novel metabolites with allelopathic activity on Orobanche seed germination and radicle growth. Phytochemistry. 109:57-65. EcolDur

  22. Clemente A., Arques M.C., Dalmais M., Le Signor C., Chinoy C., Olias R., Rayner T., Isaac P.G., Lawson D.M., Bendahmane A., Domoney C. (2015). Eliminating Anti-Nutritional Plant Food Proteins: The Case of Seed Protease Inhibitors in Pea. PLoS One. 10:e0134634 (24p.).

  23. Constancias F., Saby N.P.A., Terrat S., Dequiedt S., Horrigue W., Nowak V., Guillemin J.P., Biju-Duval L., Prévost-Bouré N.C., Ranjard L. (2015). Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape. MicrobiologyOpen. 4:518-531. EcolDur IPM (GenoSol)

  24. Constancias F., Terrat S., Saby N.P.A., Horrigue W., Villerd J., Guillemin J.P., Biju-Duval L., Nowak V., Dequiedt S., Ranjard L., Prévost-Bouré N.C. (2015). Mapping and determinism of soil microbial community distribution across an agricultural landscape. MicrobiologyOpen. 4:505-517. EcolDur IPM (GenoSol)

  25. Cool S., Pieters J.G., Mertens K.C., Mora S., Cointault F., Dubois J., van de Gucht T., Vangeyte J. (2015). Development of a High Irradiance LED Configuration for Small Field of View Motion Estimation of Fertilizer Particles. Sensors. 15:28627-28645. GEAPSI

  26. Cool S., Pieters J.G., Mertens K.C., Nuyttens D., Hijazi B., Dubois J., Cointault F., Vangeyte J. (2015). Image Based Techniques for Determining Spread Patterns of Centrifugal Fertilizer Spreaders. Agric. Agric. Sci. Procedia. 7:59-63, (issue “Farm Machinery and Processes Management in Sustainable Agriculture, 7th International Scientific Symposium, Gembloux, Belgique, 25-27 novembre 2015”). GEAPSI

  27. Corbel S., Bouaicha N., Martin-Laurent F., Crouzet O., Mougin C. (2015). Soil irrigation with toxic cyanobacterial microcystins increases soil nitrification potential. Environ. Chem. Lett. 13:459-463. EcolDur

  28. Corbel S., Mougin C., Martin-Laurent F., Crouzet O., Bru D., Nelieu S., Bouaicha N. (2015). Evaluation of phytotoxicity and ecotoxicity potentials of a cyanobacterial extract containing microcystins under realistic environmental concentrations and in a soil-plant system. Chemosphere. 128:332-340. EcolDur

  29. Cordeau S., Guillemin J.-P., Reibel C., Chauvel B. (2015). Weed species differ in their ability to emerge in no-till systems that include cover crops. Ann. Appl. Biol. 166:444-455. EcolDur

  30. Coursol S., Fromentin J., Noirot E., Brière C., Robert F., Morel J., Liang Y.-K., Lherminier J., Simon-Plas F. (2015). Long-chain bases and their phosphorylated derivatives differentially regulate cryptogein-induced production of reactive oxygen species in tobacco (Nicotiana tabacum) BY-2 cells. New Phytol. 205:1239-1249. IPM

  31. Courty P.E., Smith P., Koegel S., Redecker D., Wipf D. (2015). Inorganic nitrogen uptake and transport in beneficial plant root-microbe interactions. Crit. Rev. Plant Sci. 34:4-16. IPM

  32. Dananché C., Cassier P., Sautour M., Gautheron N., Wegrzyn J., Perraud M., Bienvenu A.-L., Nicolle M.-C., Boibieux A., Vanhems P. (2015). Fungaemia caused by FuSARium proliferatum in a patient without definite immunodeficiency. Mycopathologia. 179:135-140. MERS IPM

  33. Darmency H., Menchari Y., Le Corre V., Délye C. (2015). Fitness cost due to hERBicide resistance may trigger genetic background evolution. Evolution. 69:271-278. GEAPSI

  34. Délye C., Causse R., Gauthier V., Poncet C., Michel S. (2015). Using next-generation sequencing to detect mutations endowing resistance to pesticides: application to acetolactate-synthase (ALS)-based resistance in barnyardgrass, a polyploid grass weed. Pest Manag. Sci. 71:671-685. GEAPSI

  35. Délye C., Duhoux A., Pernin F., Riggins C.W., Tranel P.J. (2015). Molecular mechanisms of herbicide resistance. Weed Sci. (special issue: Research methods in weed science) 1:91-115. GEAPSI

  36. Dhieb C., Normand A.C., L'Ollivier C., Gautier M., Vranckx K., El Euch D., Chaker E., Hendrickx M., Dalle F., Sadfi N., Piarroux R., Ranque S. (2015). Comparison of MALDI-TOF mass spectra with microsatellite length polymorphisms in Candida albicans. J. Mass Spectrom. 50:371-377. MERS

  37. Domeignoz-Horta L., Spor A., Bru D., Breuil M.-C., Bizouard F., Léonard J., Philippot L. (2015). The diversity of the N2O reducers matters for the N2O:N2 denitrification end-product ratio across cropping and annual and a perennial systems. Front. Microbiol. 6:971 (10p.). EcolDur

  38. Duc G., Agrama H., Bao S., Berger J., Bourion V., De Ron A.M., Gowda C.L.L., Mikic A., Millot D., Singh K.B., Tullu A., Vandenberg A., Patto M.C.V., Warkentin T.D., Zong X. (2015). Breeding Annual Grain Legumes for Sustainable Agriculture: New Methods to Approach Complex Traits and Target New Cultivar Ideotypes. Crit. Rev. Plant Sci. 34:381-411. GEAPSI SAR CICAP

  39. Duhoux A., Carrère S., Gouzy J., Bonin L., Délye C. (2015). RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance. Plant Mol. Biol. 87:473-487. GEAPSI

  40. Duru M., Jouany C., Theau J.-P., Granger S., Cruz P. (2015). A plant-functional-type approach tailored for stakeholders involved in field studies to predict forage services and plant biodiversity provided by grasslands. Grass Forage Sci. 70:2-18. EcolDur

  41. Edel-Hermann V., Gautheron N., Mounier A., Steinberg C. (2015). Fusarium diversity in soil using a specific molecular approach and a cultural approach. J. Microbiol. Methods. 111:64-71. IPM

  42. Eraud C., Cadet E., Powolny T., Gaba S., Bretagnolle F., Bretagnolle V. (2015). Weed seeds, not grain, contribute to the diet of wintering skylarks in arable farmlands of Western France. Eur J Wildl Res. 61:151-161. EcolDur

  43. Essl F., Biró K., Brandes D., Broennimann O., Bullock J.M., Chapman D.S., Chauvel B., Dullinger S., Fumanal B., Guisan A., Karrer G., Kazinczi G., Kueffer C., Laitung B., Lavoie C., Leitner M., Mang T., Moser D., Müller-Schärer H., Petitpierre B., Richter R., Schaffner U., Smith M., Starfinger U., Vautard R., Vogl G., von der Lippe M., Follak S. Biological Flora of the British Isles: Ambrosia artemisiifolia. J. Ecol. 103:1069-1098. EcolDur

  44. Feissel M., Aho L.S., Georgiev S., Tapponnier R., Badie J., Bruyère R., Quenot J.-P. (2015). Pulse wave transit time measurements of cardiac output in septic shock patients: a comparison of the estimated continuous cardiac output system with transthoracic echocardiography. PLoS One. 10:art e0130489 (13p.). MERS

  45. Fernandez P., Gauvrit C., Barro F., Menendez J., De Prado R. (2015). First case of glyphosate resistance in France. Agron. Sustain. Dev. 35:1469-1476. EcolDur

  46. Filisetti D., Sterkers Y., Brenier-Pinchart M.-P., Cassaing S., Dalle F., Delhaes L., Pelloux H., Touafek F., Varlet-Marie E., Yera H., Candolfi E., Bastien P. (2015). Multicentric comparative assessment of the bio-evolution Toxoplasma gondii detection kit with eight laboratory-developed PCR assays for molecular diagnosis of congenital toxoplasmosis. J. Clin. Microbiol. 53:29-34. MERS

  47. Fried G., Belaud A., Chauvel B. (2015). Ecology and impact of an emerging invasive species in France: western ragweed (Ambrosia psilostachya DC.). Rev. Ecol.-Terre Vie. 70 Sup. 12:53-67. EcolDur

  48. Fried G., Chauvel B., Reboud X. (2015). Weed flora shifts and specialisation in winter oilseed rape in France. Weed Res. 55:514-524. EcolDur

  49. Gaba S., Lescourret F., Boudsocq S., Enjalbert J., Hinsinger P., Journet E.-P., Navas M.-L., Wery J., Louarn G., Malézieux E., Pelzer E., Prudent M., Ozier-Lafontaine H. (2015). Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design. Agron. Sustain. Dev. 35:607-623. EcolDur GEAPSI

  50. Galipaud M., Bollache L., Oughadou A., Dechaume-Moncharmont F.X. (2015). Males do not always switch females when presented with a better reproductive option. Behav. Ecol. 26:359–366. MERS

  51. Galipaud M., Bollache L., Wattier R., Dubreuil C., Dechaume-Moncharmont F.-X., Lagrue C. (2015). Overestimation of the strength of size-assortative pairing in taxa with cryptic diversity: a case of Simpson's paradox. Anim. Behav. 102:217-221. MERS

  52. Gamm M., Adrian M., Heloir M.-C. (2015). Trehalose and trehalose-6-phosphate induce stomatl movements and interfere with ABA-induced stomatal closure in grapevine J. Int. Sci. Vigne Vin. 49:165-171. IPM

  53. Gardarin A., Colbach N. (2015). How much of seed dormancy in weeds can be related to seed traits? Weed Res. 55:14-25. EcolDur

  54. Gardin J.A.C., Gouzy J., Carrère S., Délye C. (2015). ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass). BMC genomics. 16:590-612. GEAPSI

  55. Gibot-Leclerc S., Reibel C., Le Corre V., Dessaint F. (2015) Unexpected fast development of branched broomrape on slow-growing Brassicaceae. . Agron. Sustain. Dev. 35:151-156. EcolDur GEAPSI

  56. Grosjean K., Mongrand S., Beney L., Simon-Plas F., Gerbeau-Pissot P. (2015). Differential effect of plant lipids on membrane organization: specificities of phytosphingolipids and phytosterols. J. Biol. Chem. 290:5810-5825. IPM

  57. Guigue J., Leveque J., Mathieu O., Schmitt-Kopplin P., Lucio M., Arrouays D., Jolivet C., Dequiedt S., Prévost-Bouré N.C., Ranjard L. (2015). Water-extractable organic matter linked to soil physico-chemistry and microbiology, at the regional scale. Soil Biol. Biochem. 84:158-167. EcolDur (GenoSol)

  58. Guilbaud M., Piveteau P., Desvaux M., Brisse S., Briandet R. (2015). Exploring the diversity of Listeria monocytogenes biofilm architecture by high-throughput confocal laser scanning microscopy: predominance of honey-comb-like morphotype. Appl. Environ. Microbiol. 81:1813-1819. MERS

  59. Guillier C., Gamm M., Lucchi G., Truntzer C., Pecqueur D., Ducoroy P., Adrian M., Heloir M.-C. Towards the identification of two glycoproteins involved in the stomatal deregulation of downy mildew infected grapevine leaves. Mol. Plant-Microbe Interact. 28:1227-1246. IPM

  60. Gutjahr C., Sawers R.J.H., Marti G., Andrés-Hernández L., Yang S.-Y., Casieri L., Angliker H., Oakeley E.J., Wolfender J.-L., Abreu-Goodger C., Paszkowski U. (2015). Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi. Proc. Natl. Acad. Sci. U. S. A. 112:6754-6759. IPM

  61. Henckel L., Börger L., Meiss H., Gaba S., Bretagnolle V. (2015). Organic fields sustain weed metacommunity dynamics in farmland landscapes. Proc. R. Soc. B-Biol. Sci. 282:art 20150002. EcolDur

  62. Humbert C., Aimé S., Alabouvette C., Steinberg C., Olivain C. (2015). Remodeling of actin cytoskeleton in tomato cells in response to inoculation with a biocontrol strain of FuSARium oxysporum in comparison to a pathogenic strain. Plant Pathol. 64:1366-1374. IPM

  63. Hussain S., Arshad M., Springael D., Sørensen S.R., Bending G.D., Devers-Lamrani M., Maqbool Z., Martin-Laurent F. Abiotic and biotic processes governing the fate of phenylurea herbicides in soils: a review. Crit. Rev. Environ. Sci. Technol. 45:1947-1998. EcolDur

  64. Husson C., Aguayo J., Revellin C., Frey P., Loos R., Marçais B. (2015). Evidence for homoploid speciation in Phytophthora alni supports taxonomic reclassification in this species complex. Fungal Genet. Biol. 77:12-21. MERS

  65. Kaisermann A., Maron P.A., Beaumelle L., Lata J.C. (2015). Fungal communities are more sensitive indicators to non-extreme soil moisture variations than bacterial communities. Appl. Soil Ecol. 86:158-164. EcolDur (GenoSol)

  66. Kanold J.M., Guichard N., Immel F., Plasseraud L., Corneillat M., Alcaraz G., Brummer F., Marin F. (2015). Spine and test skeletal matrices of the Mediterranean sea urchin Arbacia lixula - a comparative characterization of their sugar signature. Febs J. 282:1891-1905. IPM

  67. Kelloniemi J., Trouvelot S., Heloir M.-C., Simon A., Dalmais B., Frettinger P., Cimerman A., Fermaud M., Roudet J., Baulande S., Bruel C., Choquer M., Couvelard L., Duthieuw M., Ferrarini A., Flors V., Le Pecheur P., Loisel E., Morgant G., Poussereau N., Pradier J.-M., Rascle C., Trda L., Poinssot B., Viaud M. (2015). Analysis of the molecular dialogue between gray mold (Botrytis cinerea) and grapevine (Vitis vinifera) reveals a clear shift in defense mechanisms during berry ripening. Mol. Plant-Microbe Interact. 28:1167-1180. IPM

  68. Koprdova S., Bellanger S., Skuhrovec J., Darmency H. (2015). Does gall midge larvae cause pre-dispersal seed mortality and limit cornflower population growth? Acta Oecol.-Int. J. Ecol. 69:167-172. GEAPSI

  69. Kulik A., Noirot E., Grandperret V., Bourque S., Fromentin J., Salloignon P., Truntzer C., Dobrowolska G., Simon-Plas F., Wendehenne D. (2015). Interplays between nitric oxide and reactive oxygen species in cryptogein signalling. Plant Cell Environ. 38:331-348. IPM

  70. Lamotte O., Bertoldo J., Besson-Bard A., Rosnoblet C., Aimé S., Hichami S., Terenzi H., Wendehenne D. (2015). Protein S-nitrosylation: specificity and identification strategies in plants. Front. Chem. 2:art 114 (10p.). IPM

  71. Legentil L., Paris F., Ballet C., Trouvelot S., Daire X., Vetvicka V., Ferrières V. (2015). Molecular interactions of b-(1→3)-glucans with their receptors. Molecules, 20: 9745-9766. IPM

  72. Lemaître J.-P., Duroux A., Pimpie R., Duez J.-M., Milat M.-L. (2015). Listeria phage and phage tail induction triggered by components of bacterial-growth media (phosphate, LiCl, nalidixic acid and acriflavine). Appl. Environ. Microbiol. 81:2117-2124. MERS

  73. Lemanceau P., Maron P.-A., Mazurier S., Mougel C., Pivato B., PlasSARt P., Ranjard L., Revellin C., Tardy V., Wipf D. (2015). Understanding and managing soil biodiversity: a major challenge in agroecology. Agron. Sustain. Dev. 35:67-81. EcolDur MERS IPM

  74. Le Moing V., Alla F., Doco-Lecompte T., Delahaye F., Piroth L., Chirouze C., Tattevin P., Lavigne J.-P., Erpelding M.-L., Hoen B., Vandenesch F., Duval X., Virsta Study Grp (2015). Staphylococcus aureus bloodstream infection and endocarditis - A prospective cohort study. PLoS One. 10:art e0127385 (14p.). MERS

  75. Léonard L., Beji O., Arnould C., Noirot E., Bonnotte A., Gharsallaoui A., Degraeve P., Lherminier J., Saurel R., Oulahal N. (2015). Preservation of viability and anti-Listeria activity of lactic acid bacteria, Lactococcus lactis and Lactobacillus paracasei, entrapped in gelling matrices of alginate or alginate/caseinate. Food Control. 47:7-19. IPM

  76. Lescourret F., Dutoit T., Rey F., Cote F., Hamelin M., Lichtfouse E. (2015). Agroecological engineering. Agron. Sustain. Dev. 35:1191-1198. SAR CICAP

  77. Liu Y.-B., Darmency H., Stewart C.N.J., Di K., Wei W., Tang Z.X., Ma K.-P. (2015). The effect of Bt-transgene introgression on plant growth and reproduction in wild Brassica juncea. Transgenic Res. 24:537-547. GEAPSI

  78. Loss A., Basso A., Oliveira B.S., Koucher L.d.P., de Oliveira R.A., Kurtz C., Lovato P.E., Curmi P., Brunetto G., Comin J.J. (2015). Total organic carbon and soil aggregation under a no-tillage agroecological system and conventional tillage system for onion. Rev. Bras. Cienc. Solo. 39:1212-1224. EcolDur

  79. Louarn G., Pereira-Lopès E., Fustec J., Mary B., Voisin A.S., de Faccio Carvalho P.C., Gastal F. (2015). The amounts and dynamics of nitrogen transfer to grasses differ in alfalfa and white clover-based grass-legume mixtures as a result of rooting strategies and rhizodeposit quality. Plant Soil. 389:289–305. GEAPSI

  80. Maeda K., Spor A., Edel-Hermann V., Heraud C., Breuil M.-C., Bizouard F., Toyoda S., Yoshida N., Steinberg C., Philippot L. (2015). N2O production, a widespread trait in fungi. Sci. Rep. 5:9697 (7p.). EcolDur IPM

  81. Maillard A., Diquélou S., Billard V., Lainé P., Garnica M., Prudent M., Garcia-Mina J.-M., Yvin J.-C., Ourry A. (2015). Leaf mineral nutrient remobilization during leaf senescence and modulation by nutrient deficiency. Front. Plant Sci. 6:art 317. GEAPSI

  82. Mamy L., Patureau D., Barriuso E., Bedos C., Bessac F., Louchart X., Martin-Laurent F., Miege C., Benoit P. (2015). Prediction of the fate of organic compounds in the environment from their molecular properties: a review. Crit. Rev. Environ. Sci. Technol. 45:1277-1377. EcolDur

  83. Mazurier S., Merieau A., Bergeau D., Decoin V., Sperandio D., Crépin A., Barbey C., Jeannot K., Vicré-Gibouin M., Plésiat P., Lemanceau P., Latour X. (2015). Type III secretion system and virulence markers highlight similarities and differences between human- and plant-associated pseudomonads related to Pseudomonas fluorescens and putida. Appl. Environ. Microbiol. 81:2579-2590. EcolDur

  84. Mézière D., Colbach N., Dessaint F., Granger S. (2015). Which cropping systems to reconcile weed-related biodiversity and crop production in arable crops? An approach with simulation-based indicators. Eur. J. Agron. 68:22-37. EcolDur

  85. Mézière D., Petit S., Granger S., Biju-Duval L., Colbach N. (2015). Developing a set of simulation-based indicators to assess harmfulness and contribution to biodiversity of weed communities in cropping systems. Ecol. Indic. 48:157-170. EcolDur

  86. Milne E., Banwart S.A., Noellemeyer E., Abson D.J., Ballabio C., Bampa F., Bationo A., Batjes N.H., Bernoux M., Bhattacharyya T., Black H., Buschiazzo D.E., Cai Z., Cerri C.E., Cheng K., Compagnone C., Conant R., Coutinho H.L.C., de Brogniez D., Balieiro F.d.C., Duffy C., Feller C., Fidalgo E.C.C., da Silva C.F., Funk R., Gaudig G., Gicheru P.T., Goldhaber M., Gottschalk P., Goulet F., Goverse T., Grathwohl P., Joosten H., Kamoni P.T., Kihara J., Krawczynski R., La Scala Jr N., Lemanceau P., Li L., Li Z., Lugato E., Maron P.-A., Martius C., Melillo J., Montanarella L., Nikolaidis N., Nziguheba G., Pan G., Pascual U., Paustian K., Piñeiro G., Powlson D., Quiroga A., Richter D., Sigwalt A., Six J., Smith J., Smith P., Stocking M., Tanneberger F., Termansen M., van Noordwijk M., van Wesemael B., Vargas R., Victoria R.L., Waswa B., Werner D., Wichmann S., Wichtmann W., Zhang X., Zhao Y., Zheng J., Zheng J. (2015). Soil carbon, multiple benefits. Environmental Development. 13:33-38. EcolDur

  87. Molinier V., Murat C., Frochot H., Wipf D., Spivallo R. (2015). Fine-scale spatial genetic structure analysis of the black truffle Tuber aestivum and its link to aroma variability. Environ. Microbiol. Rep. 17:3039-3050. IPM

  88. Molinier V., Murat C., Peter M., Gollotte A., De la Varga H., Meier B., Egli S., Belfiori B., Paolocci F, Wipf D. (2015). SSR- based identification of genetic groups within European populations of Tuber aestivum Vittad. Mycorrhiza. 17:3039-3050. IPM

  89. Moreau D., Pivato B., Bru D., Busset H., Deau F., Faivre C., Matejicek A., Strbik F., Philippot L., Mougel C. (2015). Plant traits related to nitrogen uptake influence plant-microbe competition. Ecology. 96:2300-2310. EcolDur (GenoSol)

  90. Mougin C., Azam D., Caquet T., Cheviron N., Dequiedt S., Le Galliard J.-F., Olivier G., Houot S., Lacroix G., Lafolie F., Maron P.-A., Michniewicz R., Pichot C., Ranjard L., Roy J., Zeller B., Clobert J., Chanzy A. (2015). A coordinated set of ecosystem research platforms open to international research in ecotoxicology, AnaEE-France. Environ. Sci. Pollut. Res. . 22:16215-16228. EcolDur (GenoSol)

  91. Nguyen T.D., Guyot S., Lherminier J., Wache Y., Saurel R., Husson F. (2015). Protection of living yeast cells by micro-organized shells of natural polyelectrolytes. Process Biochem. 50:1528-1536. IPM

  92. Noguero M., Le Signor C., Vernoud V., Bandyopadhyay K., Sanchez M., Fu C., Aubert G., Torres-Jerez I., Wen J., Mysore K.S., Gallardo K., Udvardi M., Thompson R., Verdier J. (2015). DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasis. Plant J. 81:453-466. GEAPSI

  93. Ochatt S.J. (2015). Agroecological impact of an in vitro biotechnology approach of embryo development and seed filling in legumes. Agron. Sustain. Dev. 35:535-552. GEAPSI

  94. Orgiazzi A., Bonnet Dunbar M., Panagos P., Arjen de Groot G., Lemanceau P. (2015). Soil biodiversity and DNA barcodes: opportunities and challenges. Soil Biol. Biochem. 80:244-250. EcolDur

  95. Pascual U., Termansend M., Hedlunde K., Brussaardf L., Faberg J.H., Foudia S., Lemanceau P., Jørgensend S.L. (2015). On the value of soil biodiversity and ecosystem services. Ecosystem Services. 15:11-18. EcolDur

  96. Perronne R., Le Corre V., Bretagnolle V., Gaba S. (2015) Stochastic processes and crop types shape weed community assembly in arable fields. J. Veg. Sci. 26:348-359. EcolDur GEAPSI

  97. Petit C., Arnal H., Darmency H. (2015). Effects of fragmentation and population size on the genetic diversity of Centaurea cyanus (Asteraceae) populations. Plant Ecol. Evol. 148:191-198. GEAPSI

  98. Petit S., Munier-Jolain N.M., Bretagnolle V., Bockstaller C., Gaba S., Cordeau S., Lechenet M., Mézière D., Colbach N. (2015). Ecological intensification through pesticide reduction: weed control, weed biodiversity and sustainability in arable farming. Environ. Manage. 56:1078-1090. EcolDur

  99. Pinheiro M., Garnier P., Béguet J., Martin Laurent F., Gonod L.V. (2015). The millimetre-scale distribution of 2,4-D and its degraders drives the fate of 2,4-D at the soil core scale. Soil Biol. Biochem. 88:90-100. EcolDur

  100. Piroth L., Pol S., Miailhes P., Lacombe K., Lopes A., Fillion A., Loustaud-Ratti V., Borsa-Lebas F., Salmon D., Rosenthal E., Carrat F., Cacoub P. (for The GERMIVIC Study Group). (2015). Therapeutic management and evolution of chronic hepatitis B: does HIV still have an impact? The EPIB 2012 study. Liver Int. 35:1950-1958. MERS

  101. Piroth L., Paniez H., Taburet A.-M., Vincent C., Rosenthal E., Lacombe K., Billaud E., Rey D., Zucman D., Bailly F., Bronowicki J.-P., Simony M., Diallo A., Izopet J., Aboulker J.-P., Meyer L., Molina J.-M., Grp A.H.Q.S. (2015). High Cure Rate With 24 Weeks of Daclatasvir-Based Quadruple Therapy in Treatment-Experienced, Null-Responder Patients With HIV/Hepatitis C Virus Genotype 1/4 Coinfection: The ANRS HC30 QUADRIH Study. Clin. Infect. Dis. 61:817-825. MERS

  102. Poggio S.L., Macfadyen S., Bohan D.A. (2015). Reconciling Techno-simplicity and Eco-complexity for future food security. F1000RES. 4:(12p.). EcolDur

  103. Prudent M., Salon C., Souleimanov A., Emery R.J.N., Smith D.L. (2015). Soybean is less impacted by water stress using Bradyrhizobium japonicum and thuricin-17 from Bacillus thuringiensis. Agron. Sustain. Dev. 35:749-757. GEAPSI

  104. Rey D., Piroth L., Wendling M.-J., Miailhes P., Michel M.-L., Dufour C., Haour G., Sogni P., Rohel A., Ajana F., Billaud E., Molina J.-M., Launay O., Carrat F., Anrs Hb04 B-Boost Study Grp (2015). Safety and immunogenicity of double-dose versus standard-dose hepatitis B revaccination in non-responding adults with HIV-1 (ANRS HBO4 B-BOOST): a multicentre, open-label, randomised controlled trial. Lancet Infect. Dis. 15:1283-1291. MERS

  105. Riah-Anglet W., Trinsoutrot-Gattin I., Martin-Laurent F., Laroche-Ajzenberg E., Norini M.-P., Latour X., Laval K. (2015). Soil microbial community structure and function relationships: A heat stress experiment. Appl. Soil Ecol. 86:121-130. EcolDur

  106. Robert-Gangneux F., Sterkers Y., Yera H., Accoceberry I., Menotti J., Cassaing S., Brenier-Pinchart M.P., Hennequin C., Delhaes L., Bonhomme J., Villena I., Scherer E., Dalle F., Touafek F., Filisetti D., Varlet-Marie E., Pelloux H., Bastien P. (2015). Molecular diagnosis of Toxoplasmosis in immunocompromised patients: a 3-Year Multicenter Retrospective Study. J. Clin. Microbiol. 53:1677-1684. MERS

  107. Rochelet M., Solanas S., Betelli L., Chantemesse B., Vienney F., Hartmann A. (2015). Rapid amperometric detection of Escherichia coli in wastewater by measuring β-D glucuronidase activity with disposable carbon sensors. Anal. Chim. Acta. 892:160-166. MERS

  108. Rochelet M., Solanas S., Betelli L., Neuwirth C., Vienney F., Hartmann A. (2015). Amperometric detection of extended-spectrum β-lactamase activity: application to the characterization of resistant E.coli strains. Analyst. 140:3351-3556. MERS

  109. Scarabel L., Pernin F., Délye C. (2015). Occurrence, genetic control and evolution of non-target-site based resistance to herbicides inhibiting acetolactate synthase (ALS) in the dicot weed Papaver rhoeas. Plant Sci. 238:158-169. GEAPSI

  110. Steinberg C., Laurent J., Edel-Hermann V., Barbezant M., Sixt N., Dalle F., Aho S., Bonnin A., Hartemann P., Sautour M. (2015). Adaptation of FuSARium oxysporum and FuSARium dimerum to the specific aquatic environment provided by the water systems of hospitals. Water Res. 76:53-65. IPM MERS

  111. Storkey J., Holst N., Bøjer O.Q., Bigongialli F., Bocci G., Colbach N., Dorner Z., Riemens M.M., SARtorato I., Sønderkøv M., Verschwele A. (2015). Combining a weed traits database with a population dynamics model predicts shifts in weed communities. Weed Res. 55:206-218. EcolDur

  112. Strecker T., Barnard R.L., Niklaus P.A., Scherer-Lorenzen M., Weigelt A., Scheu S., Eisenhauer N. (2015). Effects of plant diversity, functional group composition, and fertilization on soil microbial properties in experimental grassland. PLoS One. 10:art 0125678 (16p.). EcolDur

  113. Tardy F., Moreau D., Dorel M., Damour G. (2015). Trait-based characterisation of cover plants’ light competitionstrategies for weed control in banana cropping systems in the FrenchWest Indies. Europ. J. Agronomy. 71:10-18. EcolDur

  114. Tardy V., Chabbi A., Charrier X., de Berranger C., Reignier T., Dequiedt S., Faivre-Primot C., Terrat S., Ranjard L., Maron P.-A. (2015). Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil. PLoS One. 10:e0130672 (17p.). EcolDur IPM (GenoSol)

  115. Tardy V., Spor A., Mathieu O., Lévèque J., Terrat S., PlasSARt P., Reignier T., Bardgett R., van der Puttene W.H., Roggero P.P., Seddaiuh G., Bagellah S., Lemanceau P., Ranjard L., Maron P.-A. (2015). Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil. Soil Biol. Biochem. . 90:204-213. EcolDur IPM

  116. Tayeh N., Aubert G., Pilet-Nayel M.-L., Lejeune-Hénault I., Warkentin T.D., Burstin J. (2015). Genomic tools in pea breeding programs: status and perspectives. Front. Plant Sci. 6:art 1037 (13p.). GEAPSI

  117. Tayeh N., Klein A., Le Paslier M.-C., Jacquin F., Houtin H., Rond C., Chabert-Martinello M., Magnin-Robert J.-B., Marget P., Aubert G., Burstin J. (2015) Genomic prediction in pea: effect of marker density and training population size and composition on prediction accuracy. Front. Plant Sci. 6:art 941 (11p.). GEAPSI

  118. Tayeh N., Aluome C., Falque M., Jacquin F., Klein A., Chauveau A., Bérard A., Houtin H., Rond C., Kreplak J., Boucherot K., Martin C., Baranger A., Pilet-Nayel M.-L., Warkentin T.D., Brunel D., Marget P., Le Paslier M.-C., Aubert G., Burstin J. (2015). Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map. Plant J. 84:1257-1273. GEAPSI

  119. Terrat S., Dequiedt S., Horrigue W., Lelièvre M., Cruaud C., Saby N.P.A., Jolivet C., Arrouays D., Maron P.-A., Ranjard L., Chemidlin Prévost-Bouré N. (2015). Improving soil bacterial taxa-area relationships assessment using DNA meta-barcoding. Heredity. 114:468-475. EcolDur IPM (GenoSol)

  120. Terrat S., PlasSARt P., Bourgeois E., Ferreira S., Dequiedt S., Adele-Dit-De-Renseville N., Lemanceau P., Bispo A., Chabbi A., Maron P.A., Ranjard L. (2015). Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition. Microb. Biotechnol. 8:131-142. EcolDur IPM (GenoSol)

  121. Thomson B.C., Tisserant E., PlasSARt P., Uroz S., Griffiths R.I., Hannula S.E., Buée M., Mougel C., Ranjard L., Van Veen J.A., Martin F., Bailey M., Lemanceau P. Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites. Soil Biol. Biochem. 88:403-413. EcolDur

  122. Trapet P., Kulik A., Lamotte O., Jeandroz S., Bourque S., Nicolas-Francès V., Rosnoblet C., Besson-Bard A., Wendehenne D. (2015). NO signaling in plant immunity: a tale of messengers. Phytochem. 112:72-79. IPM

  123. Trdá L., Boutrot F., Claverie J., Brulé D., Dorey S., Poinssot B. (2015). Perception of pathogenic or beneficial bacteria and their evasion of host immunity: pattern recognition receptors in the frontline. Front. Plant Sci. 6:art 219 (11p.). IPM

  124. Trouvelot S., Bonneau L., Redecker D., van Tuinen D., Adrian M., Wipf D. (2015). Arbuscular mycorrhiza symbiosis in viticulture. A review. Agron. Sustain. Dev. 35:1449-1467. IPM

  125. Truong H.-N., Thalineau E., Bonneau L., Fournier C., Potin S., Balzergue S., van Tuinen D., Jeandroz S., Morandi D. (2015). The Medicago truncatula hypermycorrhizal B9 mutant displays an altered response to phosphate and is more susceptible to Aphanomyces euteiches. Plant Cell Environ. 38:73-88. IPM

  126. Ugarte C., Nicolardot B., Ubertosi M. (2015). Near-saturated hydraulic conductivity measured on a swelling silty clay loam for three integrated weed management based cropping systems. Soil Tillage Res. 150:192-200. EcolDur

  127. Vertès F., Jeuffroy M.-H., Justes E., Louarn G., Voisin A.-S. (2015). Légumineuses et prairies temporaires : des fournitures d'azote pour les rotations. Fourrages. 223:221-232. GEAPSI

  128. Vivant A.-L., Garmyn D., Gal L., Hartmann A., Piveteau P. (2015). Survival of Listeria monocytogenes in soil requires AgrA-mediated regulation. Appl. Environ. Microbiol. 81:5073-5084. MERS

  129. Voisin A.-S., Prudent M., Duc G., Salon C. (2015). Pea nodule gradients explain N nutrition and limited symbiotic fixation in hypernodulating mutants. Agron. Sustain. Dev. 35:1529-1540. GEAPSI

  130. Vulgarakis-Minov S., Cointault F., Vangeyte J., Pieters J.G., Nuyttens D. (2015). Development of high-speed Image acquisition systems for spray characterization based on single-droplet experiments. Trans. ASABE. 58:27-37. GEAPSI

  131. Vulgarakis-Minov S., Cointault F., Vangeyte J., Pieters J.G., Nuyttens D. (2015). Droplet generation and characterization using a piezoelectric droplet generator and high speed imaging techniques. Crop Prot. 69:18-27. GEAPSI

  132. Vulgarakis-Minov S., Cointault F., Vangeyte J., Pieters J.G., Nuyttens D.(2015). Pesticide spray characterisation using high speed imaging techniques. Agric. Agric. Sci. Procedia. 7:280-286., (issue “Farm Machinery and Processes Management in Sustainable Agriculture, 7th International Scientific Symposium, Gembloux, Belgique, 25-27 novembre 2015”). GEAPSI

  133. Zakaria A.B., Picaud F., Rattier T., Pudlo M., Saviot L., Chassagnon R., Lherminier J., Gharbi T., Micheau O., Herlem G. (2015). Nanovectorization of TRAIL with single wall carbon nanotubes enhances tumor cell killing. Nano Lett. 15:891-895. IPM
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